M. lignano Neoblast Screen 2016.
Mlig455 transcriptome version. Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano. (2016) Grudniewska M*, Mouton S*, Simanov S, Beltman F, Grelling M, de Mulder K, Arindrarto W, Weissert P, van der Elst S, Berezikov E. eLife 2016;5:e20607. Home Download

Text search

search Exact search

Found 1564 results for log2(Irr12h/Irr0h) >= 1 and fdr <= 0.05. Showing entries 1-20.

Graph Cluster Transcripts Mean logCPM Classification Smed/Human type Human gene Annotation
1. MligTC455_28010 Mlig455_005416, Mlig455_005382 4.42

Mlig455_005416 {REF} {Length: 2025} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=34.4]} {Smed: dd_Smed_v6_12683_1_3, dd_Smed_v6_12683_1_3, [Score=63.2, Expect=3e-11]} {RNA1509_10107, RNA1509_14085, RNA1509_1780, RNA1509_1996, RNA1509_2014} {RNA1310_8217, RNA1509_10107, RNA1509_14085, RNA1509_1996, RNA1509_2014} {RNA1509_10107, RNA1509_14085, RNA1509_1996, RNA1509_2014, RNA815_80.1}

Mlig455_005382 {REF} {Length: 1170} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=71.8]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=57.4, Expect=7e-10]} {RNA1509_1780} {RNA1310_8217} {RNA815_80.1}
2. MligTC455_27159 Mlig455_005403 4.29 Mlig455_005403 {REF} {Length: 429} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_80.1}
3. MligTC455_54002 Mlig455_062577 3.92 Gut; Xins HPGDS Mlig455_062577 {REF} {Length: 1344} {TRANSSPLICED} {Pfam: Glutathione S-transferase, C-terminal domain [PF14497.8, score=60.6]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=30.5]; Glutathione S-transferase, C-terminal domain [PF00043.27, score=22.7]} {Human: ENSG00000163106, HPGDS, hematopoietic prostaglandin D synthase, [RH, Score=104, Expect=2e-27]} {Mouse: ENSMUSG00000029919, Hpgds, hematopoietic prostaglandin D synthase, [RH, Score=90.5, Expect=2e-22]} {Celegans: WBGene00001759, gst-11, Glutathione S-Transferase, [Score=98.2, Expect=1e-25]} {Smed: dd_Smed_v6_20_0_1, dd_Smed_v6_20_0_1, [Score=176, Expect=4e-56]} {RNA1509_1453, RNA1509_20209, RNA1509_21721, RNA1509_2315, RNA1509_2503, RNA1509_26173, RNA1509_28962, RNA1509_31321, RNA1509_52612} {RNA1310_24762, RNA1509_1453, RNA1509_20209, RNA1509_21721, RNA1509_2315, RNA1509_2503, RNA1509_26173, RNA1509_28962, RNA1509_31321, RNA1509_52612} {RNA1509_1453, RNA1509_20209, RNA1509_21721, RNA1509_2315, RNA1509_2503, RNA1509_26173, RNA1509_28962, RNA1509_31321, RNA1509_52612, RNA815_10524} {SMEDTYPE: Gut [dd_Smed_v6_20_0_1, glutathione S transferase-1]} {SMEDTYPE: Xins [raj_facs_types]}
4. MligTC455_27137 Mlig455_005387 3.91 Mlig455_005387 {REF} {Length: 345} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1482, RNA1509_3} {RNA1310_851.2, RNA1509_1482} {RNA1509_1482, RNA815_80.1}
5. MligTC455_52915 Mlig455_014224 3.85 AHCY Mlig455_014224 {REF} {Length: 2060} {Pfam: S-adenosyl-L-homocysteine hydrolase [PF05221.19, score=455.6]; S-adenosyl-L-homocysteine hydrolase, NAD binding domain [PF00670.23, score=269.8]; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [PF02826.21, score=33.8]; Acetohydroxy acid isomeroreductase, NADPH-binding domain [PF07991.14, score=26.1]; Putative NAD(P)-binding [PF13241.8, score=20.1]} {Human: ENSG00000101444, AHCY, adenosylhomocysteinase, [RH, Score=683, Expect=0.0]} {Mouse: ENSMUSG00000048087, Gm4737, predicted gene 4737, [RH, Score=676, Expect=0.0]; ENSMUSG00000027597, Ahcy, S-adenosylhomocysteine hydrolase, [RH, Score=676, Expect=0.0]} {Dmel: FBgn0014455, Ahcy, Adenosylhomocysteinase, [RH, Score=717, Expect=0.0]} {Celegans: WBGene00019322, ahcy-1, Adenosylhomocysteinase, [RH, Score=723, Expect=0.0]} {Smed: dd_Smed_v6_526_0_1, dd_Smed_v6_526_0_1, [RH, Score=743, Expect=0.0]} {RNA1509_1247, RNA1509_1422, RNA1509_1799, RNA1509_255} {RNA1310_14138.1, RNA1509_1247, RNA1509_1422, RNA1509_1799, RNA1509_255} {RNA1509_1247, RNA1509_1422, RNA1509_1799, RNA1509_255, RNA815_4519.1}
6. MligTC455_27733 Mlig455_066412 3.72 Mlig455_066412 {REF} {Length: 526} {NoTransDecoderORF} {RNA1509_14626, RNA1509_1587} {RNA1310_43281.1, RNA1509_14626, RNA1509_1587} {RNA1509_14626, RNA1509_1587, RNA815_15413.1}
7. MligTC455_28019 Mlig455_005505 3.64 Mlig455_005505 {REF} {Length: 737} {NoTransDecoderORF} {RNA1509_1780} {RNA1310_8217} {RNA815_80.1}
8. MligTC455_27180 Mlig455_061198 3.58 Mlig455_061198 {REF} {Length: 1211} {NoTransDecoderORF} {RNA1509_3, RNA1509_60} {RNA1310_851.1, RNA1509_60} {RNA1509_60, RNA815_80.1}
9. MligTC455_03703 Mlig455_031193 3.47 Mlig455_031193 {REF} {Length: 1805} {RNA1509_14496, RNA1509_17573, RNA1509_2201, RNA1509_23018, RNA1509_27144, RNA1509_28330, RNA1509_40135, RNA1509_5877} {RNA1310_18653, RNA1509_14496, RNA1509_17573, RNA1509_2201, RNA1509_23018, RNA1509_27144, RNA1509_28330, RNA1509_40135, RNA1509_5877} {RNA1509_14496, RNA1509_17573, RNA1509_2201, RNA1509_23018, RNA1509_27144, RNA1509_28330, RNA1509_40135, RNA1509_5877, RNA815_9203.1}
10. MligTC455_41416 Mlig455_021854 3.45 Mlig455_021854 {REF} {Length: 1653} {TRANSSPLICED} {RNA1509_10112, RNA1509_505} {RNA1310_27932, RNA1509_10112, RNA1509_505} {RNA1509_10112, RNA1509_505, RNA815_11765.1}
11. MligTC455_26494 Mlig455_012452, Mlig455_012453, Mlig455_012450 3.44

Mlig455_012452 {REF} {Length: 789} {TRANSSPLICED} {RNA1509_39210} {RNA1310_67854.1} {RNA815_3012.1}

Mlig455_012453 {REF} {Length: 521} {TRANSSPLICED} {RNA1509_39210} {RNA1310_67854.1} {RNA815_3012.1}

Mlig455_012450 {REF} {Length: 639} {TRANSSPLICED} {RNA1509_39210} {RNA1310_67854.1} {RNA815_3012.1}
12. MligTC455_27156 Mlig455_005373 3.42 Mlig455_005373 {REF} {Length: 439} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_80.1}
13. MligTC455_42946 Mlig455_044443 3.37 Gut CD109 Mlig455_044443 {REF} {Length: 4932} {TRANSSPLICED} {Pfam: A-macroglobulin TED domain [PF07678.16, score=195.2]; Alpha-2-macroglobulin family [PF00207.24, score=75.6]; Macroglobulin domain MG3 [PF17791.3, score=55.5]; MG2 domain [PF01835.21, score=40.9]; A-macroglobulin receptor binding domain [PF07677.16, score=37.8]; Alpha-2-macroglobulin bait region domain [PF07703.16, score=31.1]} {Human: ENSG00000156535, CD109, CD109 molecule, [RH, Score=437, Expect=8e-129]} {Mouse: ENSMUSG00000046186, Cd109, CD109 antigen, [RH, Score=412, Expect=3e-120]} {Dmel: FBgn0041182, Tep2, Thioester-containing protein 2, [RH, Score=414, Expect=4e-121]} {Celegans: WBGene00013969, tep-1, TEP (ThiolEster containing Protein), [RH, Score=357, Expect=2e-101]} {Smed: dd_Smed_v6_568_0_1, dd_Smed_v6_568_0_1, [RH, Score=224, Expect=5e-59]} {RNA1509_691} {RNA1310_1129} {RNA815_366.1} {SMEDTYPE: Gut [dd_Smed_v6_568_0_1, NA]}
14. MligTC455_27178 Mlig455_005411 3.28 Mlig455_005411 {REF} {Length: 359} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_80.1}
15. MligTC455_36237 Mlig455_028889 3.28 X1; Sexual_biased FTH1 Mlig455_028889 {REF} {Length: 1060} {Pfam: Ferritin-like domain [PF00210.26, score=127.1]} {Human: ENSG00000167996, FTH1, ferritin heavy chain 1, [Score=194, Expect=1e-63]} {Mouse: ENSMUSG00000024510, Ftmt, ferritin mitochondrial, [Score=191, Expect=1e-61]; ENSMUSG00000024661, Fth1, ferritin heavy polypeptide 1, [Score=189, Expect=2e-61]} {Dmel: FBgn0030449, Fer3HCH, Ferritin 3 heavy chain homologue, [Score=156, Expect=1e-48]} {Celegans: WBGene00001500, ftn-1, Ferritin, [RH, Score=191, Expect=9e-63]} {Smed: dd_Smed_v6_3974_0_1, dd_Smed_v6_3974_0_1, [Score=204, Expect=4e-68]} {RNA1509_14648, RNA1509_2149, RNA1509_3463, RNA1509_39981} {RNA1310_38541.2, RNA1509_14648, RNA1509_2149, RNA1509_3463, RNA1509_39981} {RNA1509_14648, RNA1509_2149, RNA1509_3463, RNA1509_39981, RNA815_19466} {SMEDTYPE: X1 [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.79497.0]}
16. MligTC455_26167 Mlig455_001635 3.23 X1; self-renewal TUBB2B Mlig455_001635 {REF} {Length: 2122} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.27, score=239.0]; Tubulin C-terminal domain [PF03953.19, score=140.8]; Misato Segment II tubulin-like domain [PF10644.11, score=23.2]} {Human: ENSG00000137285, TUBB2B, tubulin beta 2B class IIb, [Score=814, Expect=0.0]; ENSG00000137267, TUBB2A, tubulin beta 2A class IIa, [Score=812, Expect=0.0]; ENSG00000196230, TUBB, tubulin beta class I, [Score=811, Expect=0.0]; ENSG00000227739, TUBB, tubulin beta class I, [Score=811, Expect=0.0]; ENSG00000235067, TUBB, tubulin beta class I, [Score=811, Expect=0.0]; ENSG00000232421, TUBB, tubulin beta class I, [Score=811, Expect=0.0]; ENSG00000224156, TUBB, tubulin beta class I, [Score=811, Expect=0.0]; ENSG00000229684, TUBB, tubulin beta class I, [Score=811, Expect=0.0]; ENSG00000183311, TUBB, tubulin beta class I, [Score=811, Expect=0.0]; ENSG00000232575, TUBB, tubulin beta class I, [Score=811, Expect=0.0]; ENSG00000188229, TUBB4B, tubulin beta 4B class IVb, [Score=811, Expect=0.0]; ENSG00000258947, TUBB3, tubulin beta 3 class III, [Score=803, Expect=0.0]; ENSG00000104833, TUBB4A, tubulin beta 4A class IVa, [Score=802, Expect=0.0]; ENSG00000176014, TUBB6, tubulin beta 6 class V, [Score=784, Expect=0.0]; ENSG00000261456, TUBB8, tubulin beta 8 class VIII, [Score=775, Expect=0.0]} {Mouse: ENSMUSG00000001473, Tubb6, tubulin, beta 6 class V, [RH, Score=788, Expect=0.0]} {Dmel: FBgn0284243, betaTub56D, beta-Tubulin at 56D, [Score=773, Expect=0.0]} {Celegans: WBGene00006537, tbb-2, Tubulin beta-2 chain, [Score=781, Expect=0.0]} {Smed: dd_Smed_v6_83_0_3, dd_Smed_v6_83_0_3, [Score=817, Expect=0.0]} {RNA1509_15718, RNA1509_19379, RNA1509_19747, RNA1509_30988, RNA1509_36839, RNA1509_41622, RNA1509_5016} {RNA1310_13968.2, RNA1509_15718, RNA1509_19379, RNA1509_19747, RNA1509_30988, RNA1509_36839, RNA1509_41622, RNA1509_5016} {RNA1509_15718, RNA1509_19379, RNA1509_19747, RNA1509_30988, RNA1509_36839, RNA1509_41622, RNA1509_5016, RNA815_1610.4} {SMEDTYPE: X1 [raj_facs_types]} {SMEDTYPE: self-renewal [4]}
17. MligTC455_38104 Mlig455_069730 3.2 Xins Mlig455_069730 {REF} {Length: 1749} {Pfam: Zinc-binding domain [PF13695.8, score=83.0]} {Mouse: ENSMUSG00000033355, Rtp4, receptor transporter protein 4, [RH, Score=60.1, Expect=4e-10]} {Smed: dd_Smed_v6_4477_0_1, dd_Smed_v6_4477_0_1, [RH, Score=112, Expect=4e-29]} {RNA1509_16534, RNA1509_22217} {RNA1310_22036, RNA1509_16534, RNA1509_22217} {RNA1509_16534, RNA1509_22217, RNA815_8927.2} {SMEDTYPE: Xins [raj_facs_types]}
18. MligTC455_38103 Mlig455_048773 3.19 Xins Mlig455_048773 {REF} {Length: 2172} {Pfam: Zinc-binding domain [PF13695.8, score=83.0]} {Mouse: ENSMUSG00000033355, Rtp4, receptor transporter protein 4, [RH, Score=60.5, Expect=4e-10]} {Smed: dd_Smed_v6_4477_0_1, dd_Smed_v6_4477_0_1, [RH, Score=112, Expect=2e-29]} {RNA1509_2735} {RNA1310_22036, RNA1509_2735} {RNA1509_2735, RNA815_8927.1} {SMEDTYPE: Xins [raj_facs_types]}
19. MligTC455_51213 Mlig455_002629 3.16 Epidermal lineage (early + late + mature); X2 Mlig455_002629 {REF} {Length: 2031} {Pfam: Dynein light chain type 1 [PF01221.20, score=50.1]; EF-hand domain pair [PF13499.8, score=32.3]; EF hand [PF00036.34, score=31.9]; EF-hand domain [PF13405.8, score=27.5]; EF-hand domain pair [PF13833.8, score=25.9]} {Smed: dd_Smed_v6_1881_0_1, dd_Smed_v6_1881_0_1, [Score=95.1, Expect=5e-25]} {RNA1509_3609, RNA1509_3840} {RNA1310_42849, RNA1509_3609, RNA1509_3840} {RNA1509_3609, RNA1509_3840, RNA815_10126} {SMEDTYPE: Epidermal lineage (early + late + mature) [dd_Smed_v6_1881_0_1, NA]} {SMEDTYPE: X2 [raj_facs_types]}
20. MligTC455_36236 Mlig455_012269 3.14 X1; Sexual_biased FTH1 Mlig455_012269 {REF} {Length: 1108} {Pfam: Ferritin-like domain [PF00210.26, score=129.6]; Rubrerythrin [PF02915.19, score=19.7]} {Human: ENSG00000167996, FTH1, ferritin heavy chain 1, [Score=196, Expect=2e-64]} {Mouse: ENSMUSG00000024510, Ftmt, ferritin mitochondrial, [Score=191, Expect=1e-61]; ENSMUSG00000024661, Fth1, ferritin heavy polypeptide 1, [Score=191, Expect=3e-62]} {Dmel: FBgn0030449, Fer3HCH, Ferritin 3 heavy chain homologue, [Score=155, Expect=3e-48]} {Celegans: WBGene00001500, ftn-1, Ferritin, [RH, Score=191, Expect=5e-63]} {Smed: dd_Smed_v6_3974_0_1, dd_Smed_v6_3974_0_1, [Score=206, Expect=1e-68]} {RNA1509_1457, RNA1509_45610} {RNA1310_38863.3, RNA1509_1457, RNA1509_45610} {RNA1509_1457, RNA1509_45610, RNA815_19466} {SMEDTYPE: X1 [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.79497.0]}
First Previous 1 2 3 Next Last
Berezikov Lab - 2016-2021 © ERIBA