M. lignano Neoblast Screen 2016.
Mlig455 transcriptome version. Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano. (2016) Grudniewska M*, Mouton S*, Simanov S, Beltman F, Grelling M, de Mulder K, Arindrarto W, Weissert P, van der Elst S, Berezikov E. eLife 2016;5:e20607. Home Download

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Found 1750 results for log2(Irr24h/Irr0h) >= 1 and fdr <= 0.05. Showing entries 1-20.

Graph Cluster Transcripts Mean logCPM Classification Smed/Human type Human gene Annotation
1. MligTC455_28030 Mlig455_005390 4.88 Mlig455_005390 {REF} {Length: 1079} {RNA1509_3} {RNA1310_851.1} {RNA815_80.1}
2. MligTC455_28029 Mlig455_005383 4.63 Mlig455_005383 {REF} {Length: 1496} {TRANSSPLICED} {RNA1509_1, RNA1509_14576} {RNA1310_851.1, RNA1509_1, RNA1509_14576} {RNA1509_1, RNA1509_14576, RNA815_80.1}
3. MligTC455_21473 Mlig455_004511 4.43 Xins; Asexual_biased; repression CTSV Mlig455_004511 {REF} {Length: 1973} {Pfam: Papain family cysteine protease [PF00112.25, score=291.7]; Cathepsin propeptide inhibitor domain (I29) [PF08246.14, score=54.9]; Peptidase C1-like family [PF03051.17, score=27.5]} {Human: ENSG00000136943, CTSV, cathepsin V, [RH, Score=357, Expect=5e-123]; ENSG00000135047, CTSL, cathepsin L, [RH, Score=355, Expect=3e-122]} {Mouse: ENSMUSG00000021477, Ctsl, cathepsin L, [RH, Score=348, Expect=2e-119]; ENSMUSG00000042243, BC051665, cDNA sequence BC051665, [RH, Score=335, Expect=1e-114]; ENSMUSG00000056728, Ctsll3, cathepsin L-like 3, [RH, Score=332, Expect=3e-113]} {Dmel: FBgn0013770, Cp1, Cysteine proteinase-1, [Score=358, Expect=2e-123]} {Celegans: WBGene00000776, cpl-1, CathePsin L family, [RH, Score=335, Expect=1e-114]} {Smed: dd_Smed_v6_48_0_1, dd_Smed_v6_48_0_1, [RH, Score=427, Expect=3e-151]} {RNA1509_124} {RNA1310_16613, RNA1509_124} {RNA1509_124, RNA815_7527} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Asexual_biased [CUFF.359663.0]} {SMEDTYPE: repression [none]}
4. MligTC455_34207 Mlig455_035831 4.43 Gut; Xins; Sexual_biased AC099489.1 Mlig455_035831 {REF} {Length: 10908} {Pfam: Lipoprotein amino terminal region [PF01347.24, score=126.2]; Domain of unknown function (DUF1943) [PF09172.13, score=95.1]; von Willebrand factor type D domain [PF00094.27, score=31.2]} {Human: ENSG00000188897, AC099489.1, vitellogenin, [Score=65.5, Expect=2e-09]} {Mouse: ENSMUSG00000020609, Apob, apolipoprotein B, [Score=57.8, Expect=3e-07]} {Dmel: FBgn0087002, apolpp, apolipophorin, [Score=77.0, Expect=4e-13]} {Smed: dd_Smed_v6_636_0_1, dd_Smed_v6_636_0_1, [Score=145, Expect=4e-34]} {RNA1509_19, RNA1509_35407} {RNA1310_78, RNA1509_35407} {RNA1509_35407, RNA815_36.1} {SMEDTYPE: Gut [dd_Smed_v6_636_0_1, apolipoprotein B (APOB)]} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.234108.0]}
5. MligTC455_28010 Mlig455_005416, Mlig455_005382 4.42

Mlig455_005416 {REF} {Length: 2025} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=34.4]} {Smed: dd_Smed_v6_12683_1_3, dd_Smed_v6_12683_1_3, [Score=63.2, Expect=3e-11]} {RNA1509_10107, RNA1509_14085, RNA1509_1780, RNA1509_1996, RNA1509_2014} {RNA1310_8217, RNA1509_10107, RNA1509_14085, RNA1509_1996, RNA1509_2014} {RNA1509_10107, RNA1509_14085, RNA1509_1996, RNA1509_2014, RNA815_80.1}

Mlig455_005382 {REF} {Length: 1170} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=71.8]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=57.4, Expect=7e-10]} {RNA1509_1780} {RNA1310_8217} {RNA815_80.1}
6. MligTC455_27159 Mlig455_005403 4.29 Mlig455_005403 {REF} {Length: 429} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_80.1}
7. MligTC455_28020 Mlig455_005404 4.04 Mlig455_005404 {REF} {Length: 171} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_6853}
8. MligTC455_27598 Mlig455_062027 3.95 Mlig455_062027 {REF} {Length: 827} {RNA1509_12716, RNA1509_19639, RNA1509_24892, RNA1509_26026, RNA1509_39274, RNA1509_4287, RNA1509_43739, RNA1509_6481, RNA1509_7128} {RNA1310_63405, RNA1509_12716, RNA1509_19639, RNA1509_26026, RNA1509_39274, RNA1509_4287, RNA1509_43739, RNA1509_6481, RNA1509_7128} {RNA1509_12716, RNA1509_19639, RNA1509_26026, RNA1509_39274, RNA1509_4287, RNA1509_43739, RNA1509_6481, RNA1509_7128, RNA815_23391}
9. MligTC455_54002 Mlig455_062577 3.92 Gut; Xins HPGDS Mlig455_062577 {REF} {Length: 1344} {TRANSSPLICED} {Pfam: Glutathione S-transferase, C-terminal domain [PF14497.8, score=60.6]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=30.5]; Glutathione S-transferase, C-terminal domain [PF00043.27, score=22.7]} {Human: ENSG00000163106, HPGDS, hematopoietic prostaglandin D synthase, [RH, Score=104, Expect=2e-27]} {Mouse: ENSMUSG00000029919, Hpgds, hematopoietic prostaglandin D synthase, [RH, Score=90.5, Expect=2e-22]} {Celegans: WBGene00001759, gst-11, Glutathione S-Transferase, [Score=98.2, Expect=1e-25]} {Smed: dd_Smed_v6_20_0_1, dd_Smed_v6_20_0_1, [Score=176, Expect=4e-56]} {RNA1509_1453, RNA1509_20209, RNA1509_21721, RNA1509_2315, RNA1509_2503, RNA1509_26173, RNA1509_28962, RNA1509_31321, RNA1509_52612} {RNA1310_24762, RNA1509_1453, RNA1509_20209, RNA1509_21721, RNA1509_2315, RNA1509_2503, RNA1509_26173, RNA1509_28962, RNA1509_31321, RNA1509_52612} {RNA1509_1453, RNA1509_20209, RNA1509_21721, RNA1509_2315, RNA1509_2503, RNA1509_26173, RNA1509_28962, RNA1509_31321, RNA1509_52612, RNA815_10524} {SMEDTYPE: Gut [dd_Smed_v6_20_0_1, glutathione S transferase-1]} {SMEDTYPE: Xins [raj_facs_types]}
10. MligTC455_27137 Mlig455_005387 3.91 Mlig455_005387 {REF} {Length: 345} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1482, RNA1509_3} {RNA1310_851.2, RNA1509_1482} {RNA1509_1482, RNA815_80.1}
11. MligTC455_27599 Mlig455_067361, Mlig455_063228 3.9

Mlig455_067361 {REF} {Length: 827} {RNA1509_24892, RNA1509_33982, RNA1509_50} {RNA1310_63405, RNA1509_33982, RNA1509_50} {RNA1509_33982, RNA1509_50, RNA815_23391}

Mlig455_063228 {REF} {Length: 829} {RNA1509_24892, RNA1509_26984, RNA1509_42125, RNA1509_57} {RNA1310_63405, RNA1509_24892, RNA1509_26984, RNA1509_42125, RNA1509_57} {RNA1509_24892, RNA1509_26984, RNA1509_42125, RNA1509_57, RNA815_23391}
12. MligTC455_27844 Mlig455_036758, Mlig455_013054 3.87 Neural (both ciliated and non-ciliated); Xins TPPP

Mlig455_036758 {REF} {Length: 2153} {Pfam: p25-alpha [PF05517.14, score=119.2]} {Human: ENSG00000171368, TPPP, tubulin polymerization promoting protein, [Score=84.0, Expect=9e-20]} {Mouse: ENSMUSG00000021573, Tppp, tubulin polymerization promoting protein, [Score=82.8, Expect=1e-19]; ENSMUSG00000008813, Tppp2, tubulin polymerization-promoting protein family member 2, [Score=79.3, Expect=1e-18]} {Dmel: FBgn0266417, ringer, ringmaker, [Score=62.4, Expect=3e-12]} {Celegans: WBGene00016321, tppp-1, Tubulin polymerization-promoting protein homolog, [Score=69.7, Expect=4e-15]} {Smed: dd_Smed_v6_650_0_1, dd_Smed_v6_650_0_1, [RH, Score=175, Expect=1e-56]} {RNA1509_14128, RNA1509_18104, RNA1509_2333, RNA1509_310, RNA1509_31624, RNA1509_4075, RNA1509_58197} {RNA1310_31700.1, RNA1509_14128, RNA1509_18104, RNA1509_2333, RNA1509_310, RNA1509_31624, RNA1509_4075, RNA1509_58197} {RNA1509_14128, RNA1509_18104, RNA1509_2333, RNA1509_310, RNA1509_31624, RNA1509_4075, RNA1509_58197, RNA815_16242} {SMEDTYPE: Neural (both ciliated and non-ciliated) [dd_Smed_v6_650_0_1, tubulin polymerization-promoting protein family member 3 (TPPP3)]} {SMEDTYPE: Xins [raj_facs_types]}

Mlig455_013054 {REF} {Length: 2066} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_24163} {RNA1310_3938} {RNA815_52.1}
13. MligTC455_52915 Mlig455_014224 3.85 AHCY Mlig455_014224 {REF} {Length: 2060} {Pfam: S-adenosyl-L-homocysteine hydrolase [PF05221.19, score=455.6]; S-adenosyl-L-homocysteine hydrolase, NAD binding domain [PF00670.23, score=269.8]; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [PF02826.21, score=33.8]; Acetohydroxy acid isomeroreductase, NADPH-binding domain [PF07991.14, score=26.1]; Putative NAD(P)-binding [PF13241.8, score=20.1]} {Human: ENSG00000101444, AHCY, adenosylhomocysteinase, [RH, Score=683, Expect=0.0]} {Mouse: ENSMUSG00000048087, Gm4737, predicted gene 4737, [RH, Score=676, Expect=0.0]; ENSMUSG00000027597, Ahcy, S-adenosylhomocysteine hydrolase, [RH, Score=676, Expect=0.0]} {Dmel: FBgn0014455, Ahcy, Adenosylhomocysteinase, [RH, Score=717, Expect=0.0]} {Celegans: WBGene00019322, ahcy-1, Adenosylhomocysteinase, [RH, Score=723, Expect=0.0]} {Smed: dd_Smed_v6_526_0_1, dd_Smed_v6_526_0_1, [RH, Score=743, Expect=0.0]} {RNA1509_1247, RNA1509_1422, RNA1509_1799, RNA1509_255} {RNA1310_14138.1, RNA1509_1247, RNA1509_1422, RNA1509_1799, RNA1509_255} {RNA1509_1247, RNA1509_1422, RNA1509_1799, RNA1509_255, RNA815_4519.1}
14. MligTC455_27177 Mlig455_005375 3.83 Mlig455_005375 {REF} {Length: 484} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_3} {RNA1310_851.1} {RNA815_80.1}
15. MligTC455_21475 Mlig455_064237 3.81 Xins; Asexual_biased; repression CTSV Mlig455_064237 {REF} {Length: 2670} {Pfam: Papain family cysteine protease [PF00112.25, score=291.7]; Cathepsin propeptide inhibitor domain (I29) [PF08246.14, score=54.9]; Peptidase C1-like family [PF03051.17, score=27.5]} {Human: ENSG00000136943, CTSV, cathepsin V, [RH, Score=358, Expect=3e-123]; ENSG00000135047, CTSL, cathepsin L, [RH, Score=356, Expect=2e-122]} {Mouse: ENSMUSG00000021477, Ctsl, cathepsin L, [RH, Score=348, Expect=9e-120]; ENSMUSG00000042243, BC051665, cDNA sequence BC051665, [RH, Score=335, Expect=1e-114]; ENSMUSG00000056728, Ctsll3, cathepsin L-like 3, [RH, Score=333, Expect=2e-113]} {Dmel: FBgn0013770, Cp1, Cysteine proteinase-1, [Score=359, Expect=6e-124]} {Celegans: WBGene00000776, cpl-1, CathePsin L family, [RH, Score=336, Expect=6e-115]} {Smed: dd_Smed_v6_48_0_1, dd_Smed_v6_48_0_1, [RH, Score=428, Expect=2e-151]} {RNA1509_124, RNA1509_29064, RNA1509_51476, RNA1509_81} {RNA1310_16613, RNA1509_29064, RNA1509_51476, RNA1509_81} {RNA1509_29064, RNA1509_51476, RNA1509_81, RNA815_7527} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Asexual_biased [CUFF.359663.0]} {SMEDTYPE: repression [none]}
16. MligTC455_33242 Mlig455_039321 3.75 Sexual_biased Mlig455_039321 {REF} {Length: 3983} {Smed: dd_Smed_v6_23342_0_1, dd_Smed_v6_23342_0_1, [RH, Score=57.4, Expect=5e-12]} {RNA1509_313, RNA1509_32450, RNA1509_340} {RNA1310_14249, RNA1509_313, RNA1509_32450, RNA1509_340} {RNA1509_313, RNA1509_32450, RNA1509_340, RNA815_20483.1} {SMEDTYPE: Sexual_biased [CUFF.83600.0]}
17. MligTC455_51703 Mlig455_062573 3.73 UBC Mlig455_062573 {REF} {Length: 3728} {Pfam: Ubiquitin family [PF00240.25, score=654.3]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=319.2]; Ubiquitin-like domain [PF14560.8, score=117.2]; TANK binding kinase 1 ubiquitin-like domain [PF18396.3, score=83.7]; Ubiquitin-2 like Rad60 SUMO-like [PF13881.8, score=76.6]; Ubiquitin-like domain [PF18037.3, score=68.3]; DUF2407 ubiquitin-like domain [PF10302.11, score=62.3]; FlgD Ig-like domain [PF13860.8, score=38.9]; Toluene-4-monooxygenase system protein B (TmoB) [PF06234.14, score=38.7]; Cilia- and flagella-associated protein 298 [PF11069.10, score=34.5]; Staphylokinase/Streptokinase family [PF02821.18, score=32.8]; Crinkler effector protein N-terminal domain [PF20147.1, score=31.6]; UDP-glucose:Glycoprotein Glucosyltransferase [PF06427.13, score=28.0]; Ubiquitin-like domain [PF18036.3, score=27.6]; GDYXXLXY protein [PF14345.8, score=27.0]; Protein of unknown function (DUF969) [PF06149.14, score=26.1]; Bacterial Ig domain [PF17957.3, score=24.6]; Domain of Unknown Function with PDB structure (DUF3861) [PF12977.9, score=22.9]; ORF11CD3 domain [PF10549.11, score=22.5]; fungal STAND N-terminal Goodbye domain [PF17109.7, score=20.1]; Family of unknown function (DUF5450) [PF17529.4, score=19.2]} {Human: ENSG00000150991, UBC, ubiquitin C, [RH, Score=887, Expect=0.0]} {Mouse: ENSMUSG00000008348, Ubc, ubiquitin C, [RH, Score=890, Expect=0.0]} {Dmel: FBgn0086558, Ubi-p5E, Ubiquitin-5E, [RH, Score=889, Expect=0.0]} {Celegans: WBGene00006727, ubq-1, Polyubiquitin-A Ubiquitin Ubiquitin-related, [RH, Score=874, Expect=0.0]} {Smed: dd_Smed_v6_1697_0_2, dd_Smed_v6_1697_0_2, [RH, Score=164, Expect=8e-50]} {RNA1509_47440} {RNA1310_46150.1} {RNA815_15519.1}
18. MligTC455_28008 Mlig455_005374 3.73 Mlig455_005374 {REF} {Length: 1804} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=20.1]} {RNA1509_22337} {RNA1310_8217} {RNA815_80.1}
19. MligTC455_21828 Mlig455_014076 3.72 Mlig455_014076 {REF} {Length: 1769} {Pfam: Ependymin [PF00811.20, score=62.5]} {RNA1509_14852, RNA1509_19075, RNA1509_29432, RNA1509_40562, RNA1509_47163} {RNA1310_26645, RNA1509_14852, RNA1509_19075, RNA1509_40562, RNA1509_47163} {RNA1509_14852, RNA1509_19075, RNA1509_40562, RNA1509_47163, RNA815_4988.2}
20. MligTC455_27733 Mlig455_066412 3.72 Mlig455_066412 {REF} {Length: 526} {NoTransDecoderORF} {RNA1509_14626, RNA1509_1587} {RNA1310_43281.1, RNA1509_14626, RNA1509_1587} {RNA1509_14626, RNA1509_1587, RNA815_15413.1}
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