Graph | Cluster | Transcripts | Mean logCPM | Classification | Smed/Human type | Human gene | Annotation |
---|---|---|---|---|---|---|---|
|
MligTC455_26531 | Mlig455_066234, Mlig455_063015 | 0.34 | X1 | Mlig455_066234 {REF} {Length: 4558} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=105.8]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=105.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=78.6]; Integrase zinc binding domain [PF17921.3, score=52.0]; Integrase core domain [PF13683.8, score=22.3]; H2C2 zinc finger [PF09337.12, score=21.8]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=93.6, Expect=5e-19]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=93.6, Expect=5e-19]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=283, Expect=7e-82]} {RNA1509_20640} {RNA1310_16535.2, RNA1509_20640} {RNA1509_20640, RNA815_10957} {SMEDTYPE: X1 [raj_facs_types]} Mlig455_063015 {REF} {Length: 1688} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=67.4]; Integrase zinc binding domain [PF17921.3, score=54.3]; Integrase core domain [PF13683.8, score=23.4]; H2C2 zinc finger [PF09337.12, score=23.2]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=55.8, Expect=1e-07]} {Smed: dd_Smed_v6_14472_0_32, dd_Smed_v6_14472_0_32, [Score=88.2, Expect=8e-21]} {RNA1509_20640} {RNA1310_49260} {RNA815_10957} |