M. lignano Neoblast Screen 2016.
Mlig455 transcriptome version. Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano. (2016) Grudniewska M*, Mouton S*, Simanov S, Beltman F, Grelling M, de Mulder K, Arindrarto W, Weissert P, van der Elst S, Berezikov E. eLife 2016;5:e20607. Home Download

Text search

search Exact search

Found 1 result for *Mlig455_001581*.

Graph Cluster Transcripts Mean logCPM Classification Smed/Human type Human gene Annotation
1. MligTC455_36904 Mlig455_001586, Mlig455_001584, Mlig455_001594, Mlig455_060117, Mlig455_001589, Mlig455_001592, Mlig455_001588, Mlig455_060118, Mlig455_053422, Mlig455_053302, Mlig455_053290, Mlig455_001585, Mlig455_001581, Mlig455_001606, Mlig455_053303 1.02 Xins; Sexual_biased ALKBH3

Mlig455_001586 {REF} {Length: 313} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=159.2]} {Smed: dd_Smed_v6_13734_0_18, dd_Smed_v6_13734_0_18, [Score=67.4, Expect=1e-11]} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_001584 {REF} {Length: 776} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=159.9]} {Smed: dd_Smed_v6_13734_0_20, dd_Smed_v6_13734_0_20, [Score=68.6, Expect=4e-12]} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_001594 {REF} {Length: 1499} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=53.2]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=72.0, Expect=2e-13]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=77.8, Expect=2e-15]} {Smed: dd_Smed_v6_5051_0_1, dd_Smed_v6_5051_0_1, [Score=73.2, Expect=1e-13]} {RNA1509_54652} {RNA1310_40585} {RNA815_33355}

Mlig455_060117 {REF} {Length: 6370} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=72.3]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=100, Expect=8e-23]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=101, Expect=4e-23]} {Smed: dd_Smed_v6_5051_0_1, dd_Smed_v6_5051_0_1, [Score=110, Expect=7e-25]} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_001589 {REF} {Length: 347} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=79.4]} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_001592 {REF} {Length: 1511} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=28.2]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=54.3, Expect=2e-07]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=59.3, Expect=2e-09]} {Smed: dd_Smed_v6_7441_0_1, dd_Smed_v6_7441_0_1, [Score=47.4, Expect=9e-06]} {RNA1509_54652} {RNA1310_40585} {RNA815_33355} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.362843.0]}

Mlig455_001588 {REF} {Length: 1757} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=44.7]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=60.1, Expect=3e-09]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=65.5, Expect=3e-11]} {Smed: dd_Smed_v6_5051_0_1, dd_Smed_v6_5051_0_1, [Score=62.4, Expect=3e-10]} {RNA1509_54652} {RNA1310_40585} {RNA815_33355}

Mlig455_060118 {REF} {Length: 6775} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=72.4]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=102, Expect=4e-23]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=102, Expect=2e-23]} {Smed: dd_Smed_v6_5051_0_1, dd_Smed_v6_5051_0_1, [Score=111, Expect=2e-25]} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_053422 {REF} {Length: 5645} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_053302 {REF} {Length: 3334} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=159.2]} {Smed: dd_Smed_v6_13734_0_18, dd_Smed_v6_13734_0_18, [Score=67.4, Expect=1e-11]} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_053290 {REF} {Length: 7176} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=76.0]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=100, Expect=6e-23]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=100, Expect=5e-23]} {Smed: dd_Smed_v6_5051_0_1, dd_Smed_v6_5051_0_1, [Score=110, Expect=2e-25]} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_001585 {REF} {Length: 639} {Pfam: Endonuclease-reverse transcriptase [PF14529.8, score=20.9]} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_001581 {REF} {Length: 791} {Pfam: Endonuclease-reverse transcriptase [PF14529.8, score=20.4]} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_001606 {REF} {Length: 6612} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=64.7]; Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=21.2]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=85.1, Expect=2e-17]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=89.7, Expect=5e-19]} {Smed: dd_Smed_v6_5051_0_1, dd_Smed_v6_5051_0_1, [Score=85.1, Expect=6e-17]} {RNA1509_54881} {RNA1310_4197} {RNA815_6431}

Mlig455_053303 {REF} {Length: 622} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=72.4]} {Human: ENSG00000166199, ALKBH3, alkB homolog 3, alpha-ketoglutaratedependent dioxygenase, [Score=102, Expect=4e-23]} {Mouse: ENSMUSG00000040174, Alkbh3, alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase, [Score=102, Expect=2e-23]} {Smed: dd_Smed_v6_5051_0_1, dd_Smed_v6_5051_0_1, [Score=111, Expect=2e-25]} {RNA1509_54652} {RNA1310_25476} {RNA815_33355}
Berezikov Lab - 2016-2021 © ERIBA